File list

• File abstract_scatter_device.cpp
• File abstract_scatter_device.hpp
  • concurrent_queue
    • push()
    • empty()
    • size()
    • try_pop()
    • wait_and_pop()
    • wait_for_empty()
    • the_queue
    • the_mutex
    • the_condition_variable
  • AbstractScatterDevice
    • getTimer()
    • AbstractScatterDevice()
    • ~AbstractScatterDevice()
    • run()
    • stage_data()
    • compute()
    • next()
    • write()
    • runner()
    • create_flow()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • ram_check()
    • status()
    • progress()
    • flow_
    • p_coordinates
    • allcomm_
    • partitioncomm_
    • sample_
    • vectors_
    • current_vector_
    • p_monitor_
    • p_hdf5writer_
    • NN
    • NF
    • NA
    • atfinal_
    • afinal_
    • a2final_
    • scatterfactors
    • timer_
• File abstract_vectors_scatter_device.cpp
• File abstract_vectors_scatter_device.hpp
  • AbstractVectorsScatterDevice
    • AbstractVectorsScatterDevice()
    • progress()
    • init_subvectors()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • NM
    • subvector_index_
    • current_subvector_
• File abstract_vectors_xpu_scatter_device.cpp
• File abstract_vectors_xpu_scatter_device.hpp
  • AbstractVectorsXPUScatterDevice
    • AbstractVectorsXPUScatterDevice()
    • progress()
    • init_subvectors()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • NM
    • subvector_index_
    • current_subvector_
• File abstract_xpu_scatter_device.cpp
• File abstract_xpu_scatter_device.hpp
  • AbstractXPUScatterDevice
    • getTimer()
    • AbstractXPUScatterDevice()
    • ~AbstractXPUScatterDevice()
    • AbstractXPUScatterDevice()
    • operator=()
    • run()
    • stage_data()
    • compute()
    • next()
    • write()
    • runner()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • ram_check()
    • status()
    • progress()
    • p_coordinates
    • allcomm_
    • partitioncomm_
    • sample_
    • vectors_
    • current_vector_
    • p_monitor_
    • p_hdf5writer_
    • NN
    • NF
    • NA
    • atfinal_
    • afinal_
    • a2final_
    • scatterfactors
    • timer_
• File all_vectors_scatter_device.cpp
• File all_vectors_scatter_device.hpp
  • AllVectorsScatterDevice
    • AllVectorsScatterDevice()
    • scatter()
    • stage_data()
    • compute()
    • scatterblock()
    • store()
    • dsp()
    • alignpad()
    • exchange()
    • ram_check()
    • ~AllVectorsScatterDevice()
    • at_
    • p_coordinates
    • fftw_planF_
    • fftw_planB_
• File assignment.cpp
• File assignment.hpp
  • Assignment
    • Assignment()
    • operator[]()
    • size()
    • offset()
    • contains()
    • index()
    • NN_
    • NAF_
    • rank_
    • size_
    • offset_
  • ModAssignment
    • ModAssignment()
    • operator[]()
    • size()
    • offset()
    • max()
    • contains()
    • index()
  • DivAssignment
    • DivAssignment()
    • operator[]()
    • size()
    • offset()
    • max()
    • contains()
    • index()
• File atom.cpp
• File atom.hpp
  • Atom
    • ID
    • name
    • index
    • mass
    • serialize()
• File atoms.cpp
• File atoms.hpp
  • Atoms
    • Atoms()
    • Atoms()
    • add()
    • select()
    • ~Atoms()
    • operator[]()
    • size()
    • selections
    • serialize()
    • ids_
• File atomselection.cpp
• File atomselection.hpp
  • IAtomselection
    • operator[]()
    • size()
    • ~IAtomselection()
    • serialize()
  • IndexAtomselection
    • IndexAtomselection()
    • IndexAtomselection()
    • operator[]()
    • size()
    • serialize()
    • ids_
  • RangeAtomselection
    • RangeAtomselection()
    • RangeAtomselection()
    • operator[]()
    • size()
    • serialize()
    • from_
    • to_
• File atomselection_reader.cpp
• File atomselection_reader.hpp
  • AtomselectionReader
    • read_ndx()
    • read_pdb()
• File atomselections.cpp
• File atomselections.hpp
  • Atomselections
    • ~Atomselections()
    • operator[]()
    • set()
    • exists()
    • rename()
    • iterator
    • serialize()
    • _selections
• File center_of_mass.cpp
  • determinant_sign()
  • determinant()
• File center_of_mass.hpp
  • CenterOfMass
    • CenterOfMass()
    • CenterOfMass()
    • CenterOfMass()
    • operator CartesianCoor3D()
    • m_center
  • Fit
    • Fit()
• File common.cpp
  • sinc()
• File common.hpp
  • coor_t
  • coor2_t
  • sassf
  • sass_use_float()
  • sinc()
• File control.hpp
• File coor3d.cpp
  • operator<<()
  • operator*()
  • operator*()
  • operator/()
  • operator<<()
  • operator<<()
  • rotate()
  • operator<<()
  • operator*()
  • operator*()
  • operator/()
  • operator/()
• File coor3d.hpp
  • cartrect
  • sign()
  • operator*()
  • operator*()
  • operator/()
  • rotate()
  • operator*()
  • operator*()
  • operator/()
  • operator/()
  • CartesianCoor3D
    • CartesianCoor3D()
    • CartesianCoor3D()
    • CartesianCoor3D()
    • CartesianCoor3D()
    • CartesianCoor3D()
    • CartesianCoor3D()
    • operator=()
    • length()
    • operator=()
    • operator-()
    • operator+()
    • cross_product()
    • operator*()
    • operator<()
    • ~CartesianCoor3D()
    • x
    • y
    • z
    • serialize()
    • operator<<
  • fmt::formatter< CartesianCoor3D >
    • parse()
    • format()
  • CylinderCoor3D
    • CylinderCoor3D()
    • CylinderCoor3D()
    • CylinderCoor3D()
    • CylinderCoor3D()
    • operator=()
    • operator-()
    • ~CylinderCoor3D()
    • r
    • phi
    • z
    • operator<<
  • SphericalCoor3D
    • SphericalCoor3D()
    • SphericalCoor3D()
    • SphericalCoor3D()
    • SphericalCoor3D()
    • operator=()
    • operator-()
    • ~SphericalCoor3D()
    • r
    • phi
    • theta
    • operator<<
  • CartesianVectorBase
    • CartesianVectorBase()
    • CartesianVectorBase()
    • get_base()
    • operator[]()
    • project()
    • base_
  • ImagNum
    • ImagNum()
    • ImagNum()
    • ~ImagNum()
    • length()
    • operator=()
    • operator-()
    • operator+()
    • operator*()
    • re
    • im
    • serialize()
    • operator<<
• File coordinate_set.cpp
• File coordinate_set.hpp
  • CoordinateRepresentation
    • CARTESIAN
    • SPHERICAL
    • CYLINDRICAL
  • CoordinateSet
    • CoordinateSet()
    • CoordinateSet()
    • size()
    • get_representation()
    • c1
    • c2
    • c3
    • serialize()
    • m_size
    • m_representation
  • CartesianCoordinateSet
    • CartesianCoordinateSet()
    • CartesianCoordinateSet()
    • CartesianCoordinateSet()
    • translate()
    • translate()
    • transform()
    • rotate()
    • serialize()
  • SphericalCoordinateSet
    • SphericalCoordinateSet()
    • SphericalCoordinateSet()
    • serialize()
  • CylindricalCoordinateSet
    • CylindricalCoordinateSet()
    • CylindricalCoordinateSet()
    • get_axis()
    • set_axis()
    • serialize()
    • axis_
• File coordinate_sets.cpp
• File coordinate_sets.hpp
  • CoordinateSetAlignment
    • type
    • order
    • selection
    • reference_selection
    • p_reference
    • serialize()
  • MotionWalkerAlignment
    • p_mw
    • selection
    • reference_selection
    • p_reference
    • serialize()
  • CoordinateSets
    • CoordinateSets()
    • ~CoordinateSets()
    • load()
    • set_selection()
    • set_atoms()
    • set_representation()
    • get_representation()
    • add_prealignment()
    • add_postalignment()
    • write_xyz()
    • get_selection()
    • init()
    • size()
    • serialize()
    • m_motion_walkers
    • m_prealignments
    • m_postalignments
    • frames
    • p_atoms
    • p_selection
    • m_representation
• File coordinate_writer.cpp
• File coordinate_writer.hpp
  • ICoordinateWriter
    • init()
    • prepare()
    • write()
  • DCDCoordinateWriter
    • DCDCoordinateWriter()
    • init()
    • prepare()
    • write()
    • blocks_
    • entries_
    • file_
    • data_offset_
• File data_stager.cpp
• File data_stager.hpp
  • DataStagerByFrame
    • DataStagerByFrame()
    • stage()
    • stage_firstpartition()
    • distribute_coordinates()
    • stage_fillpartitions()
    • write()
    • m_sample
    • allcomm_
    • partitioncomm_
    • timer_
    • NFN
    • NN
    • NNPP
    • NP
    • NA
    • NF
    • p_coordinates
  • DataStagerByAtom
    • DataStagerByAtom()
    • stage()
    • staged_data_size()
    • fill_coordinates()
    • stage_firstpartition()
    • stage_fillpartitions()
    • write()
    • m_sample
    • allcomm_
    • partitioncomm_
    • timer_
    • NFN
    • NN
    • NNPP
    • NP
    • NA
    • NF
    • staged_data_size_
    • p_coordinates
• File database.cpp
  • std
• File database.hpp
  • DatabaseExlusionParameters
    • DatabaseExlusionParameters()
    • reg()
    • get()
    • serialize()
    • add_quicklookup()
    • clear_quicklookup()
    • m_functiontypes
    • m_constants
    • m_quicklookup
    • quicklookup_counter
  • DatabaseVolumesParameters
    • DatabaseVolumesParameters()
    • reg()
    • get()
    • serialize()
    • add_quicklookup()
    • clear_quicklookup()
    • m_functiontypes
    • m_constants
    • m_quicklookup
    • quicklookup_counter
  • DatabaseSFactorsParameters
    • DatabaseSFactorsParameters()
    • reg()
    • get()
    • serialize()
    • add_quicklookup()
    • clear_quicklookup()
    • m_functiontypes
    • m_constants
    • m_quicklookup
    • quicklookup_counter
  • DatabaseMassesParameters
    • reg()
    • get()
    • serialize()
    • m_masses
  • DatabaseAtomIDsParameters
    • DatabaseAtomIDsParameters()
    • reg()
    • get()
    • rget()
    • size()
    • serialize()
    • m_IDs
    • m_rIDs
    • nextID
  • DatabaseNamesPDBParameters
    • DatabaseNamesPDBParameters()
    • reg()
    • get()
    • serialize()
    • add_quicklookup()
    • clear_quicklookup()
    • m_label2regexp
    • m_quicklookup
    • quicklookup_counter
  • DatabaseNamesParameters
    • pdb
    • serialize()
  • Database
    • init()
    • get_rawconfig()
    • get_config()
    • ~Database()
    • write()
    • names
    • masses
    • volumes
    • exclusionfactors
    • sfactors
    • atomIDs
    • Inst()
    • serialize()
    • Database()
    • Database()
    • operator=()
    • read_xml()
    • guessformat()
    • check()
    • rawconfig
    • config
• File decomposition_plan.cpp
• File decomposition_plan.hpp
  • DecompositionParameters
    • DecompositionParameters()
    • penalty()
    • penalty_percent()
    • PID()
    • get_NN()
    • get_NQ()
    • get_NAF()
    • get_NP()
    • get_NQcycles()
    • get_NAFcycles()
    • get_NNpP()
    • nbytesize()
    • m_NN
    • m_NQ
    • m_NAF
    • m_NP
    • m_penalty
    • m_NAFcycles
    • m_NQcycles
    • m_NNpP
    • m_elbytesize
    • m_nbytesize
  • DecompositionPlan
    • DecompositionPlan()
    • ~DecompositionPlan()
    • colors()
    • static_imbalance()
    • penalty()
    • partitions()
    • partitionsize()
    • nbytesize()
    • p_dp_best
• File exceptions.hpp
  • sassena
    • sassena::terminate_request
      • terminate_request()
    • sassena::help_request
      • help_request()
• File file_writer_service.cpp
• File file_writer_service.hpp
  • HDF5WriterTag
    • HANGUP
    • WRITE
  • HDF5DataEntry
    • qvector
    • p_fqt
    • fq0
    • fq
    • fq2
  • HDF5WriterClient
    • HDF5WriterClient()
    • ~HDF5WriterClient()
    • write()
    • write()
    • flush()
    • m_endpoint
    • m_lastflush
    • data_queue
  • HDF5WriterService
    • HDF5WriterService()
    • get_endpoint()
    • get_qvectors()
    • hangup()
    • run()
    • init_new()
    • init()
    • test_fqt_dim()
    • listener()
    • flush()
    • m_filename
    • m_lastflush
    • m_io_service
    • m_acceptor
    • m_listener
    • m_listener_status
    • data_qvectors
    • data_fqt
    • data_fq0
    • data_fq
    • data_fq2
• File frame.cpp
• File frame.hpp
  • Frame
    • clear()
    • coord3D()
    • number_of_atoms
    • t
    • origin
    • x
    • y
    • z
    • unitcell
    • serialize()
• File frames.cpp
• File frames.hpp
  • Frames
    • Frames()
    • size()
    • add_frameset()
    • load()
    • serialize()
    • find_frameset()
    • test_framenumber()
    • framesets
    • number_of_frames
  • Frameset
    • read_frame()
    • frame_number_offset
    • number_of_frames
    • number_of_atoms
    • serialize()
  • FileFrameset
    • ~FileFrameset()
    • trim_index()
    • load_index()
    • save_index()
    • generate_index()
    • frameset_index_
    • filename
    • serialize()
  • DCDHeader
    • headsize
    • fingerprint
    • number_of_frames
    • dummy1
    • timesteps_between_frames
    • buf1
    • size_of_timestep
    • flag_ext_block1
    • flag_ext_block2
  • DCDFrameset
    • DCDFrameset()
    • ~DCDFrameset()
    • init()
    • DCDFrameset()
    • read_frame()
    • generate_index()
    • close()
    • serialize()
    • detect()
    • init_byte_pos
    • flag_ext_block1
    • flag_ext_block2
    • block_size_byte
    • x_byte_offset
    • y_byte_offset
    • z_byte_offset
    • block1_byte_offset
    • block2_byte_offset
    • dcdfile
  • PDBFrameset
    • PDBFrameset()
    • init()
    • PDBFrameset()
    • read_frame()
    • generate_index()
    • serialize()
    • detect()
    • default_uc
  • XTCFrameset
    • XTCFrameset()
    • ~XTCFrameset()
    • init()
    • XTCFrameset()
    • read_frame()
    • generate_index()
    • close()
    • serialize()
    • detect()
    • p_xdrfile
  • TRRFrameset
    • TRRFrameset()
    • ~TRRFrameset()
    • init()
    • TRRFrameset()
    • read_frame()
    • generate_index()
    • close()
    • serialize()
    • detect()
    • p_xdrfile
  • CloneFrameset
    • CloneFrameset()
    • CloneFrameset()
    • read_frame()
    • serialize()
    • p_originalframeset
• File frameset_index.cpp
• File frameset_index.hpp
  • FramesetIndex
    • set_signature()
    • get_signature()
    • load()
    • save()
    • select()
    • generate_signature()
    • serialize()
    • signature
• File geometry.hpp
  • DrawSphereHelper
    • DrawSphereHelper()
    • draw()
    • midpointOnSphere()
    • drawMeshedTriangleOnSphere()
    • drawTriangleOnSphere()
    • vectors
    • center
    • radius
    • maxEdgeLength
• File i_scatter_device.hpp
  • IScatterDevice
    • getTimer()
    • run()
    • ~IScatterDevice()
    • runner()
    • status()
    • progress()
• File log.hpp
• File log.cpp
• File log.hpp
• File monitor_service.cpp
• File monitor_service.hpp
  • MonitorTag
    • MONITOR_HANGUP
    • MONITOR_UPDATE
    • MONITOR_RESET
    • MONITOR_SAMPLINGFACTOR
  • MonitorService
    • MonitorService()
    • get_endpoint()
    • reset()
    • hangup()
    • run()
    • listener()
    • update()
    • print()
    • reset_timer()
    • reset_state()
    • m_io_service
    • m_acceptor
    • m_from
    • m_to
    • m_current
    • m_timer
    • m_timerlabel
    • m_listener
    • m_listener_status
    • update_thresholds
    • samplingfactor_
  • MonitorClient
    • MonitorClient()
    • reset_server()
    • set_samplingfactor()
    • set_samplingfactor_server()
    • update()
    • m_endpoint
    • update_thresholds
    • lastupdate_
    • samplingfactor_
• File motion_walker.cpp
• File motion_walker.hpp
  • MotionWalker
    • transform()
    • serialize()
  • LinearMotionWalker
    • LinearMotionWalker()
    • transform()
    • serialize()
    • generate()
    • LinearMotionWalker()
    • translation()
    • m_translate
  • FixedMotionWalker
    • FixedMotionWalker()
    • transform()
    • serialize()
    • FixedMotionWalker()
    • translation()
    • m_translate
  • OscillationMotionWalker
    • OscillationMotionWalker()
    • transform()
    • serialize()
    • OscillationMotionWalker()
    • translation()
    • m_translate
    • m_frequency
    • m_sampling
  • RandomMotionWalker
    • RandomMotionWalker()
    • ~RandomMotionWalker()
    • transform()
    • serialize()
    • init()
    • generate()
    • RandomMotionWalker()
    • translation()
    • translations
    • m_init
    • m_displace
    • m_seed
    • m_sampling
    • m_direction
    • p_myspheredistribution
  • BrownianMotionWalker
    • BrownianMotionWalker()
    • ~BrownianMotionWalker()
    • transform()
    • serialize()
    • init()
    • generate()
    • BrownianMotionWalker()
    • translation()
    • translations
    • m_init
    • m_displace
    • m_seed
    • m_sampling
    • m_direction
    • p_mynormaldistribution
    • p_myspheredistribution
  • LocalBrownianMotionWalker
    • LocalBrownianMotionWalker()
    • ~LocalBrownianMotionWalker()
    • transform()
    • serialize()
    • init()
    • generate()
    • LocalBrownianMotionWalker()
    • translation()
    • translations
    • m_init
    • m_radius
    • m_displace
    • m_seed
    • m_sampling
    • m_direction
    • p_mynormaldistribution
    • p_myspheredistribution
  • RotationalBrownianMotionWalker
    • RotationalBrownianMotionWalker()
    • ~RotationalBrownianMotionWalker()
    • transform()
    • serialize()
    • init()
    • generate()
    • RotationalBrownianMotionWalker()
    • transformations
    • m_init
    • m_displace
    • m_seed
    • m_sampling
    • p_mynormaldistribution
    • p_myspheredistribution
• File multipole_scatter_device.cpp
• File multipole_scatter_device.hpp
  • MPSphereScatterDevice
    • MPSphereScatterDevice()
    • progress()
    • init_moments()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • ram_check()
    • scatter()
    • stage_data()
    • compute()
    • scatterblock()
    • store()
    • dsp()
    • alignpad()
    • exchange()
    • ~MPSphereScatterDevice()
    • NM
    • LMAX
    • qvector_
    • multipole_index_
    • current_moment_
    • j_l
    • at_
    • p_coordinates
    • fftw_planF_
    • fftw_planB_
  • MPCylinderScatterDevice
    • MPCylinderScatterDevice()
    • progress()
    • init_moments()
    • print_pre_stage_info()
    • print_post_stage_info()
    • print_pre_runner_info()
    • print_post_runner_info()
    • ram_check()
    • scatter()
    • stage_data()
    • compute()
    • scatterblock()
    • store()
    • dsp()
    • alignpad()
    • exchange()
    • ~MPCylinderScatterDevice()
    • NM
    • qvector_
    • multipole_index_
    • current_moment_
    • j_l
    • at_
    • p_coordinates
    • fftw_planF_
    • fftw_planB_
• File parameters.cpp
• File parameters.hpp
  • SampleStructureParameters
    • write_xml()
    • file
    • filepath
    • format
    • serialize()
  • SampleSelectionParameters
    • SampleSelectionParameters()
    • SampleSelectionParameters()
    • type()
    • write_xml()
    • serialize()
    • type_
  • SampleIndexSelectionParameters
    • SampleIndexSelectionParameters()
    • SampleIndexSelectionParameters()
    • write_xml()
    • ids_
    • serialize()
  • SampleRangeSelectionParameters
    • SampleRangeSelectionParameters()
    • SampleRangeSelectionParameters()
    • write_xml()
    • from_
    • to_
    • serialize()
  • SampleLexicalSelectionParameters
    • SampleLexicalSelectionParameters()
    • SampleLexicalSelectionParameters()
    • write_xml()
    • expression_
    • serialize()
  • SampleFileSelectionParameters
    • SampleFileSelectionParameters()
    • SampleFileSelectionParameters()
    • write_xml()
    • file_
    • filepath_
    • format_
    • selector_
    • expression_
    • serialize()
  • SampleFramesetParameters
    • write_xml()
    • first
    • last
    • clones
    • last_set
    • stride
    • file
    • filepath
    • format
    • index
    • indexpath
    • index_default
    • serialize()
  • SampleFramesetsParameters
    • write_xml()
    • serialize()
  • SampleMotionReferenceParameters
    • write_xml()
    • type
    • selection
    • file
    • filepath
    • format
    • frame
    • serialize()
  • SampleMotionParameters
    • write_xml()
    • type
    • displace
    • frequency
    • radius
    • selection
    • seed
    • sampling
    • direction
    • reference
    • serialize()
  • SampleAlignmentReferenceParameters
    • write_xml()
    • type
    • selection
    • file
    • filepath
    • format
    • frame
    • serialize()
  • SampleAlignmentParameters
    • write_xml()
    • reference
    • type
    • selection
    • order
    • serialize()
  • SampleParameters
    • ~SampleParameters()
    • write_xml()
    • structure
    • selections
    • framesets
    • motions
    • alignments
    • serialize()
  • ScatteringBackgroundFactor
    • write_xml()
    • selection
    • value
    • serialize()
  • ScatteringBackgroundKappaParameters
    • write_xml()
    • selection
    • value
    • serialize()
  • ScatteringBackgroundCutBoxParameters
    • ScatteringBackgroundCutBoxParameters()
    • write_xml()
    • sld
    • xlength
    • ylength
    • zlength
    • midpoint
    • serialize()
  • ScatteringBackgroundCutParameters
    • write_xml()
    • box
    • serialize()
  • ScatteringBackgroundParameters
    • write_xml()
    • type
    • factor
    • kappas
    • cut
    • serialize()
  • ScatteringAverageOrientationVectorsParameters
    • create()
    • write_xml()
    • type
    • algorithm
    • file
    • filepath
    • resolution
    • seed
    • serialize()
  • ScatteringAverageOrientationMultipoleMomentsParameters
    • create()
    • write_xml()
    • type
    • resolution
    • file
    • filepath
    • serialize()
  • ScatteringAverageOrientationMultipoleParameters
    • write_xml()
    • type
    • moments
    • serialize()
  • ScatteringAverageOrientationExactParameters
    • write_xml()
    • type
    • serialize()
  • ScatteringAverageOrientationParameters
    • write_xml()
    • type
    • axis
    • vectors
    • multipole
    • exact
    • serialize()
  • ScatteringAverageParameters
    • write_xml()
    • orientation
    • serialize()
  • ScatteringDspParameters
    • Type
      • Autocorrelate
      • Square
      • Plain
    • Method
      • FFTW
      • Direct
    • write_xml()
    • type
    • method
    • serialize()
  • ScatteringVectorsScanParameters
    • ScatteringVectorsScanParameters()
    • write_xml()
    • from
    • to
    • points
    • exponent
    • basevector
    • serialize()
  • ScatteringVectorsParameters
    • create_from_scans()
    • write_xml()
    • scans
    • serialize()
  • ScatteringSignalParameters
    • write_xml()
    • file
    • filepath
    • fqt
    • fq
    • fq0
    • fq2
    • serialize()
  • ScatteringParameters
    • write_xml()
    • type
    • dsp
    • qvectors
    • average
    • background
    • signal
    • serialize()
  • StagerParameters
    • write_xml()
    • dump
    • file
    • filepath
    • format
    • target
    • mode
    • serialize()
  • LimitsServicesSignalMemoryParameters
    • write_xml()
    • server
    • client
    • serialize()
  • LimitsServicesSignalTimesParameters
    • write_xml()
    • serverflush
    • clientflush
    • serialize()
  • LimitsServicesSignalParameters
    • write_xml()
    • memory
    • times
    • serialize()
  • LimitsServicesMonitorParameters
    • write_xml()
    • delay
    • sampling
    • serialize()
  • LimitsServicesParameters
    • write_xml()
    • signal
    • monitor
    • serialize()
  • LimitsComputationMemoryParameters
    • write_xml()
    • result_buffer
    • alignpad_buffer
    • exchange_buffer
    • signal_buffer
    • scale
    • serialize()
  • LimitsComputationParameters
    • write_xml()
    • threads
    • processes
    • cores
    • memory
    • serialize()
  • LimitsDecompositionPartitionsParameters
    • write_xml()
    • automatic
    • size
    • serialize()
  • LimitsDecompositionParameters
    • write_xml()
    • utilization
    • partitions
    • serialize()
  • LimitsSignalParameters
    • write_xml()
    • chunksize
    • serialize()
  • LimitsStageMemoryParameters
    • write_xml()
    • data
    • buffer
    • serialize()
  • LimitsStageParameters
    • write_xml()
    • memory
    • serialize()
  • LimitsParameters
    • write_xml()
    • stage
    • signal
    • services
    • computation
    • decomposition
    • serialize()
  • DebugMonitorParameters
    • write_xml()
    • update
    • serialize()
  • DebugPrintParameters
    • write_xml()
    • orientations
    • serialize()
  • DebugIowriteParameters
    • write_xml()
    • write
    • buffer
    • serialize()
  • DebugParameters
    • write_xml()
    • timer
    • barriers
    • iowrite
    • print
    • monitor
    • serialize()
  • DatabaseParameters
    • write_xml()
    • type
    • file
    • filepath
    • format
    • serialize()
• File performance_analyzer.cpp
• File performance_analyzer.hpp
  • PerformanceMeasure
    • sum
    • count
    • mean
    • variance
    • min
    • max
  • PerformanceAnalyzer
    • PerformanceAnalyzer()
    • report()
    • report_relative()
    • analyze()
    • m_measures
  • boost::accumulators
• File platform.hpp
  • sass
    • sass::platform
      • Device
        • CPU
        • CUDA
        • SYCL
      • device()
      • is_cuda()
      • is_sycl()
      • to_string()
• File sample.hpp
• File sample.cpp
• File sample.hpp
• File scatter_device_factory.cpp
• File scatter_device_factory.hpp
  • ScatterDeviceFactory
    • create()
• File scatter_devices.hpp
• File scatter_factors.cpp
• File scatter_factors.hpp
  • ReciprocalBox
    • ReciprocalBox()
    • set_all()
    • get_sld()
    • get_xlength()
    • get_ylength()
    • get_zlength()
    • get_midpoint()
    • _sld
    • _xlength
    • _ylength
    • _zlength
    • _midpoint
  • ScatterFactors
    • ScatterFactors()
    • set_selection()
    • set_sample()
    • get_selection()
    • get()
    • get_all()
    • get_recibox()
    • update()
    • update_kappas()
    • update_reciprocal_box()
    • compute_background()
    • set_background()
    • p_sample
    • p_selection
    • m_background
    • factors
    • m_kappas
    • _ReciBox
• File self_vectors_cuda_scatter_device.hpp
  • SelfVectorsCUDAScatterDevice
    • SelfVectorsCUDAScatterDevice()
    • SelfVectorsCUDAScatterDevice()
    • operator=()
    • ~SelfVectorsCUDAScatterDevice()
    • progress()
    • stage_data()
    • compute()
    • ram_check()
    • print_pre_runner_info()
    • scatter()
    • scatterblock()
    • store()
    • dsp()
    • coord_size_
    • current_atomindex_
    • assignment_
    • dscatter_factors
    • dcoords
    • dsubvector_index
    • dafinal_
    • da2final_
    • datfinal_
    • NTHREADS
    • global_memory_
    • shared_mem_per_block_
    • max_threads_per_block_
    • max_threads_per_sm_
    • num_sm_
    • max_parallel_atoms_
    • blockDim_
• File self_vectors_scatter_device.cpp
• File self_vectors_scatter_device.hpp
  • SelfVectorsScatterDevice
    • SelfVectorsScatterDevice()
    • SelfVectorsScatterDevice()
    • operator=()
    • scatter()
    • scatter_single()
    • progress()
    • stage_data()
    • compute()
    • scatterblock()
    • store()
    • dsp()
    • ram_check()
    • ~SelfVectorsScatterDevice()
    • at_
    • p_coordinates
    • current_atomindex_
    • coord_size_
    • assignment_
    • fftw_planF_
    • fftw_planB_
• File services.hpp
• File smath.cpp
  • smath
    • auto_correlate_direct()
    • auto_correlate_direct()
    • auto_correlate_fftw()
    • auto_correlate_fftw()
    • auto_correlate_fftw()
    • square_elements()
    • square_elements()
    • multiply_elements()
    • multiply_elements()
    • add_elements()
    • add_elements()
    • add_elements()
    • reduce()
    • reduce()
• File smath.hpp
  • smath
    • sine()
    • multiply_elements()
    • square_elements()
    • add_elements()
    • auto_correlate_fftw()
    • auto_correlate_direct()
    • reduce()
    • auto_correlate_fftw()
    • add_elements()
• File timer.cpp
• File timer.hpp
  • Timer_timeval
    • Timer_timeval()
    • Timer_timeval()
    • operator=()
    • tv_sec
    • tv_usec
    • serialize()
  • Timer
    • keys()
    • start()
    • stop()
    • sum()
    • min()
    • max()
    • mean()
    • variance()
    • count()
    • clear()
    • has_key()
    • times_type
    • serialize()
    • t_diff()
    • t_diff()
    • times
    • starttimes
    • states
• File wrapper.cpp
  • mpi
    • mpi::wrapper
      • broadcast_stream()
      • broadcast_class()
• File wrapper.hpp
  • mpi
    • mpi::wrapper
• File xml_interface.cpp
• File xml_interface.hpp
  • XMLElement
    • XMLElement()
    • set()
    • type()
    • name()
    • content()
    • print()
    • get_node_ptr()
    • children
    • node_ptr
  • XMLInterface
    • XMLInterface()
    • ~XMLInterface()
    • get()
    • get()
    • dump()
    • get_value()
    • exists()
    • set_current()
    • p_doc
    • p_xpathCtx