Index

A

AbstractScatterDevice (C++ class), [1], [2] AbstractScatterDevice::a2final_ (C++ member) AbstractScatterDevice::AbstractScatterDevice (C++ function) AbstractScatterDevice::afinal_ (C++ member) AbstractScatterDevice::allcomm_ (C++ member) AbstractScatterDevice::atfinal_ (C++ member) AbstractScatterDevice::compute (C++ function) AbstractScatterDevice::create_flow (C++ function) AbstractScatterDevice::current_vector_ (C++ member) AbstractScatterDevice::flow_ (C++ member) AbstractScatterDevice::getTimer (C++ function) AbstractScatterDevice::NA (C++ member) AbstractScatterDevice::next (C++ function) AbstractScatterDevice::NF (C++ member) AbstractScatterDevice::NN (C++ member) AbstractScatterDevice::p_coordinates (C++ member) AbstractScatterDevice::p_hdf5writer_ (C++ member) AbstractScatterDevice::p_monitor_ (C++ member) AbstractScatterDevice::partitioncomm_ (C++ member) AbstractScatterDevice::print_post_runner_info (C++ function) AbstractScatterDevice::print_post_stage_info (C++ function) AbstractScatterDevice::print_pre_runner_info (C++ function) AbstractScatterDevice::print_pre_stage_info (C++ function) AbstractScatterDevice::progress (C++ function) AbstractScatterDevice::ram_check (C++ function) AbstractScatterDevice::run (C++ function) AbstractScatterDevice::runner (C++ function) AbstractScatterDevice::sample_ (C++ member) AbstractScatterDevice::scatterfactors (C++ member) AbstractScatterDevice::stage_data (C++ function) AbstractScatterDevice::status (C++ function) AbstractScatterDevice::timer_ (C++ member) AbstractScatterDevice::vectors_ (C++ member) AbstractScatterDevice::write (C++ function) AbstractScatterDevice::~AbstractScatterDevice (C++ function) AbstractVectorsScatterDevice (C++ class), [1], [2] AbstractVectorsScatterDevice::AbstractVectorsScatterDevice (C++ function) AbstractVectorsScatterDevice::current_subvector_ (C++ member) AbstractVectorsScatterDevice::init_subvectors (C++ function) AbstractVectorsScatterDevice::NM (C++ member) AbstractVectorsScatterDevice::print_post_runner_info (C++ function) AbstractVectorsScatterDevice::print_post_stage_info (C++ function) AbstractVectorsScatterDevice::print_pre_runner_info (C++ function) AbstractVectorsScatterDevice::print_pre_stage_info (C++ function) AbstractVectorsScatterDevice::progress (C++ function) AbstractVectorsScatterDevice::subvector_index_ (C++ member) AbstractVectorsXPUScatterDevice (C++ class), [1] AbstractVectorsXPUScatterDevice::AbstractVectorsXPUScatterDevice (C++ function) AbstractVectorsXPUScatterDevice::current_subvector_ (C++ member) AbstractVectorsXPUScatterDevice::init_subvectors (C++ function) AbstractVectorsXPUScatterDevice::NM (C++ member) AbstractVectorsXPUScatterDevice::print_post_runner_info (C++ function) AbstractVectorsXPUScatterDevice::print_post_stage_info (C++ function) AbstractVectorsXPUScatterDevice::print_pre_runner_info (C++ function) AbstractVectorsXPUScatterDevice::print_pre_stage_info (C++ function) AbstractVectorsXPUScatterDevice::progress (C++ function) AbstractVectorsXPUScatterDevice::subvector_index_ (C++ member) AbstractXPUScatterDevice (C++ class), [1] AbstractXPUScatterDevice::a2final_ (C++ member) AbstractXPUScatterDevice::AbstractXPUScatterDevice (C++ function), [1] AbstractXPUScatterDevice::afinal_ (C++ member) AbstractXPUScatterDevice::allcomm_ (C++ member) AbstractXPUScatterDevice::atfinal_ (C++ member) AbstractXPUScatterDevice::compute (C++ function) AbstractXPUScatterDevice::current_vector_ (C++ member) AbstractXPUScatterDevice::getTimer (C++ function) AbstractXPUScatterDevice::NA (C++ member) AbstractXPUScatterDevice::next (C++ function) AbstractXPUScatterDevice::NF (C++ member) AbstractXPUScatterDevice::NN (C++ member) AbstractXPUScatterDevice::operator= (C++ function) AbstractXPUScatterDevice::p_coordinates (C++ member) AbstractXPUScatterDevice::p_hdf5writer_ (C++ member)

AbstractXPUScatterDevice::p_monitor_ (C++ member) AbstractXPUScatterDevice::partitioncomm_ (C++ member) AbstractXPUScatterDevice::print_post_runner_info (C++ function) AbstractXPUScatterDevice::print_post_stage_info (C++ function) AbstractXPUScatterDevice::print_pre_runner_info (C++ function) AbstractXPUScatterDevice::print_pre_stage_info (C++ function) AbstractXPUScatterDevice::progress (C++ function) AbstractXPUScatterDevice::ram_check (C++ function) AbstractXPUScatterDevice::run (C++ function) AbstractXPUScatterDevice::runner (C++ function) AbstractXPUScatterDevice::sample_ (C++ member) AbstractXPUScatterDevice::scatterfactors (C++ member) AbstractXPUScatterDevice::stage_data (C++ function) AbstractXPUScatterDevice::status (C++ function) AbstractXPUScatterDevice::timer_ (C++ member) AbstractXPUScatterDevice::vectors_ (C++ member) AbstractXPUScatterDevice::write (C++ function) AbstractXPUScatterDevice::~AbstractXPUScatterDevice (C++ function) AllVectorsScatterDevice (C++ class), [1], [2] AllVectorsScatterDevice::alignpad (C++ function) AllVectorsScatterDevice::AllVectorsScatterDevice (C++ function) AllVectorsScatterDevice::at_ (C++ member) AllVectorsScatterDevice::compute (C++ function) AllVectorsScatterDevice::dsp (C++ function) AllVectorsScatterDevice::exchange (C++ function) AllVectorsScatterDevice::fftw_planB_ (C++ member) AllVectorsScatterDevice::fftw_planF_ (C++ member) AllVectorsScatterDevice::p_coordinates (C++ member) AllVectorsScatterDevice::ram_check (C++ function) AllVectorsScatterDevice::scatter (C++ function) AllVectorsScatterDevice::scatterblock (C++ function) AllVectorsScatterDevice::stage_data (C++ function) AllVectorsScatterDevice::store (C++ function) AllVectorsScatterDevice::~AllVectorsScatterDevice (C++ function) Assignment (C++ class), [1] Assignment::Assignment (C++ function) Assignment::contains (C++ function) Assignment::index (C++ function) Assignment::NAF_ (C++ member) Assignment::NN_ (C++ member) Assignment::offset (C++ function) Assignment::offset_ (C++ member) Assignment::operator[] (C++ function) Assignment::rank_ (C++ member) Assignment::size (C++ function) Assignment::size_ (C++ member) Atom (C++ class), [1] Atom::ID (C++ member) Atom::index (C++ member) Atom::mass (C++ member) Atom::name (C++ member) Atom::serialize (C++ function) Atoms (C++ class), [1] Atoms::add (C++ function) Atoms::Atoms (C++ function), [1] Atoms::ids_ (C++ member) Atoms::operator[] (C++ function) Atoms::select (C++ function) Atoms::selections (C++ member) Atoms::serialize (C++ function) Atoms::size (C++ function) Atoms::~Atoms (C++ function) AtomselectionReader (C++ class), [1] AtomselectionReader::read_ndx (C++ function) AtomselectionReader::read_pdb (C++ function) Atomselections (C++ class), [1] Atomselections::_selections (C++ member) Atomselections::exists (C++ function) Atomselections::iterator (C++ type) Atomselections::operator[] (C++ function) Atomselections::rename (C++ function) Atomselections::serialize (C++ function) Atomselections::set (C++ function) Atomselections::~Atomselections (C++ function)

B

boost::accumulators (C++ type), [1] BrownianMotionWalker (C++ class), [1] BrownianMotionWalker::BrownianMotionWalker (C++ function), [1] BrownianMotionWalker::generate (C++ function) BrownianMotionWalker::init (C++ function) BrownianMotionWalker::m_direction (C++ member) BrownianMotionWalker::m_displace (C++ member) BrownianMotionWalker::m_init (C++ member)

BrownianMotionWalker::m_sampling (C++ member) BrownianMotionWalker::m_seed (C++ member) BrownianMotionWalker::p_mynormaldistribution (C++ member) BrownianMotionWalker::p_myspheredistribution (C++ member) BrownianMotionWalker::serialize (C++ function) BrownianMotionWalker::transform (C++ function) BrownianMotionWalker::translation (C++ function) BrownianMotionWalker::translations (C++ member) BrownianMotionWalker::~BrownianMotionWalker (C++ function)

C

CartesianCoor3D (C++ class), [1] CartesianCoor3D::CartesianCoor3D (C++ function), [1], [2], [3], [4], [5] CartesianCoor3D::cross_product (C++ function) CartesianCoor3D::length (C++ function) CartesianCoor3D::operator* (C++ function) CartesianCoor3D::operator+ (C++ function) CartesianCoor3D::operator- (C++ function) CartesianCoor3D::operator< (C++ function) CartesianCoor3D::operator<< (C++ function) CartesianCoor3D::operator= (C++ function), [1] CartesianCoor3D::serialize (C++ function) CartesianCoor3D::x (C++ member) CartesianCoor3D::y (C++ member) CartesianCoor3D::z (C++ member) CartesianCoor3D::~CartesianCoor3D (C++ function) CartesianCoordinateSet (C++ class), [1] CartesianCoordinateSet::CartesianCoordinateSet (C++ function), [1], [2] CartesianCoordinateSet::rotate (C++ function) CartesianCoordinateSet::serialize (C++ function) CartesianCoordinateSet::transform (C++ function) CartesianCoordinateSet::translate (C++ function), [1] CartesianVectorBase (C++ class), [1] CartesianVectorBase::base_ (C++ member) CartesianVectorBase::CartesianVectorBase (C++ function), [1] CartesianVectorBase::get_base (C++ function) CartesianVectorBase::operator[] (C++ function) CartesianVectorBase::project (C++ function) cartrect (C++ type) CenterOfMass (C++ class), [1] CenterOfMass::CenterOfMass (C++ function), [1], [2] CenterOfMass::m_center (C++ member) CenterOfMass::operator CartesianCoor3D (C++ function) CloneFrameset (C++ class), [1] CloneFrameset::CloneFrameset (C++ function), [1] CloneFrameset::p_originalframeset (C++ member) CloneFrameset::read_frame (C++ function) CloneFrameset::serialize (C++ function) concurrent_queue (C++ class), [1] concurrent_queue::empty (C++ function) concurrent_queue::push (C++ function) concurrent_queue::size (C++ function) concurrent_queue::the_condition_variable (C++ member) concurrent_queue::the_mutex (C++ member) concurrent_queue::the_queue (C++ member) concurrent_queue::try_pop (C++ function) concurrent_queue::wait_and_pop (C++ function) concurrent_queue::wait_for_empty (C++ function) coor2_t (C++ type) coor_t (C++ type) CoordinateRepresentation (C++ enum) CoordinateRepresentation::CARTESIAN (C++ enumerator) CoordinateRepresentation::CYLINDRICAL (C++ enumerator) CoordinateRepresentation::SPHERICAL (C++ enumerator)

CoordinateSet (C++ class), [1] CoordinateSet::c1 (C++ member) CoordinateSet::c2 (C++ member) CoordinateSet::c3 (C++ member) CoordinateSet::CoordinateSet (C++ function), [1] CoordinateSet::get_representation (C++ function) CoordinateSet::m_representation (C++ member) CoordinateSet::m_size (C++ member) CoordinateSet::serialize (C++ function) CoordinateSet::size (C++ function) CoordinateSetAlignment (C++ class), [1] CoordinateSetAlignment::order (C++ member) CoordinateSetAlignment::p_reference (C++ member) CoordinateSetAlignment::reference_selection (C++ member) CoordinateSetAlignment::selection (C++ member) CoordinateSetAlignment::serialize (C++ function) CoordinateSetAlignment::type (C++ member) CoordinateSets (C++ class), [1] CoordinateSets::add_postalignment (C++ function) CoordinateSets::add_prealignment (C++ function) CoordinateSets::CoordinateSets (C++ function) CoordinateSets::frames (C++ member) CoordinateSets::get_representation (C++ function) CoordinateSets::get_selection (C++ function) CoordinateSets::init (C++ function) CoordinateSets::load (C++ function) CoordinateSets::m_motion_walkers (C++ member) CoordinateSets::m_postalignments (C++ member) CoordinateSets::m_prealignments (C++ member) CoordinateSets::m_representation (C++ member) CoordinateSets::p_atoms (C++ member) CoordinateSets::p_selection (C++ member) CoordinateSets::serialize (C++ function) CoordinateSets::set_atoms (C++ function) CoordinateSets::set_representation (C++ function) CoordinateSets::set_selection (C++ function) CoordinateSets::size (C++ function) CoordinateSets::write_xyz (C++ function) CoordinateSets::~CoordinateSets (C++ function) CylinderCoor3D (C++ class), [1] CylinderCoor3D::CylinderCoor3D (C++ function), [1], [2], [3] CylinderCoor3D::operator- (C++ function) CylinderCoor3D::operator<< (C++ function) CylinderCoor3D::operator= (C++ function) CylinderCoor3D::phi (C++ member) CylinderCoor3D::r (C++ member) CylinderCoor3D::z (C++ member) CylinderCoor3D::~CylinderCoor3D (C++ function) CylindricalCoordinateSet (C++ class), [1] CylindricalCoordinateSet::axis_ (C++ member) CylindricalCoordinateSet::CylindricalCoordinateSet (C++ function), [1] CylindricalCoordinateSet::get_axis (C++ function) CylindricalCoordinateSet::serialize (C++ function) CylindricalCoordinateSet::set_axis (C++ function)

D

Database (C++ class), [1] Database::atomIDs (C++ member) Database::check (C++ function) Database::config (C++ member) Database::Database (C++ function), [1] Database::exclusionfactors (C++ member) Database::get_config (C++ function) Database::get_rawconfig (C++ function) Database::guessformat (C++ function) Database::init (C++ function) Database::Inst (C++ function) Database::masses (C++ member) Database::names (C++ member) Database::operator= (C++ function) Database::rawconfig (C++ member) Database::read_xml (C++ function) Database::serialize (C++ function) Database::sfactors (C++ member) Database::volumes (C++ member) Database::write (C++ function) Database::~Database (C++ function) DatabaseAtomIDsParameters (C++ class), [1] DatabaseAtomIDsParameters::DatabaseAtomIDsParameters (C++ function) DatabaseAtomIDsParameters::get (C++ function) DatabaseAtomIDsParameters::m_IDs (C++ member) DatabaseAtomIDsParameters::m_rIDs (C++ member) DatabaseAtomIDsParameters::nextID (C++ member) DatabaseAtomIDsParameters::reg (C++ function) DatabaseAtomIDsParameters::rget (C++ function) DatabaseAtomIDsParameters::serialize (C++ function) DatabaseAtomIDsParameters::size (C++ function) DatabaseExlusionParameters (C++ class), [1] DatabaseExlusionParameters::add_quicklookup (C++ function) DatabaseExlusionParameters::clear_quicklookup (C++ function) DatabaseExlusionParameters::DatabaseExlusionParameters (C++ function) DatabaseExlusionParameters::get (C++ function) DatabaseExlusionParameters::m_constants (C++ member) DatabaseExlusionParameters::m_functiontypes (C++ member) DatabaseExlusionParameters::m_quicklookup (C++ member) DatabaseExlusionParameters::quicklookup_counter (C++ member) DatabaseExlusionParameters::reg (C++ function) DatabaseExlusionParameters::serialize (C++ function) DatabaseMassesParameters (C++ class), [1] DatabaseMassesParameters::get (C++ function) DatabaseMassesParameters::m_masses (C++ member) DatabaseMassesParameters::reg (C++ function) DatabaseMassesParameters::serialize (C++ function) DatabaseNamesParameters (C++ class), [1] DatabaseNamesParameters::pdb (C++ member) DatabaseNamesParameters::serialize (C++ function) DatabaseNamesPDBParameters (C++ class), [1] DatabaseNamesPDBParameters::add_quicklookup (C++ function) DatabaseNamesPDBParameters::clear_quicklookup (C++ function) DatabaseNamesPDBParameters::DatabaseNamesPDBParameters (C++ function) DatabaseNamesPDBParameters::get (C++ function) DatabaseNamesPDBParameters::m_label2regexp (C++ member) DatabaseNamesPDBParameters::m_quicklookup (C++ member) DatabaseNamesPDBParameters::quicklookup_counter (C++ member) DatabaseNamesPDBParameters::reg (C++ function) DatabaseNamesPDBParameters::serialize (C++ function) DatabaseParameters (C++ class), [1] DatabaseParameters::file (C++ member) DatabaseParameters::filepath (C++ member) DatabaseParameters::format (C++ member) DatabaseParameters::serialize (C++ function) DatabaseParameters::type (C++ member) DatabaseParameters::write_xml (C++ function) DatabaseSFactorsParameters (C++ class), [1] DatabaseSFactorsParameters::add_quicklookup (C++ function) DatabaseSFactorsParameters::clear_quicklookup (C++ function) DatabaseSFactorsParameters::DatabaseSFactorsParameters (C++ function) DatabaseSFactorsParameters::get (C++ function) DatabaseSFactorsParameters::m_constants (C++ member) DatabaseSFactorsParameters::m_functiontypes (C++ member) DatabaseSFactorsParameters::m_quicklookup (C++ member) DatabaseSFactorsParameters::quicklookup_counter (C++ member) DatabaseSFactorsParameters::reg (C++ function) DatabaseSFactorsParameters::serialize (C++ function) DatabaseVolumesParameters (C++ class), [1] DatabaseVolumesParameters::add_quicklookup (C++ function) DatabaseVolumesParameters::clear_quicklookup (C++ function) DatabaseVolumesParameters::DatabaseVolumesParameters (C++ function) DatabaseVolumesParameters::get (C++ function) DatabaseVolumesParameters::m_constants (C++ member) DatabaseVolumesParameters::m_functiontypes (C++ member) DatabaseVolumesParameters::m_quicklookup (C++ member) DatabaseVolumesParameters::quicklookup_counter (C++ member) DatabaseVolumesParameters::reg (C++ function) DatabaseVolumesParameters::serialize (C++ function) DataStagerByAtom (C++ class), [1] DataStagerByAtom::allcomm_ (C++ member) DataStagerByAtom::DataStagerByAtom (C++ function) DataStagerByAtom::fill_coordinates (C++ function) DataStagerByAtom::m_sample (C++ member) DataStagerByAtom::NA (C++ member) DataStagerByAtom::NF (C++ member) DataStagerByAtom::NFN (C++ member) DataStagerByAtom::NN (C++ member) DataStagerByAtom::NNPP (C++ member) DataStagerByAtom::NP (C++ member) DataStagerByAtom::p_coordinates (C++ member) DataStagerByAtom::partitioncomm_ (C++ member) DataStagerByAtom::stage (C++ function) DataStagerByAtom::stage_fillpartitions (C++ function) DataStagerByAtom::stage_firstpartition (C++ function) DataStagerByAtom::staged_data_size (C++ function) DataStagerByAtom::staged_data_size_ (C++ member) DataStagerByAtom::timer_ (C++ member) DataStagerByAtom::write (C++ function) DataStagerByFrame (C++ class), [1] DataStagerByFrame::allcomm_ (C++ member) DataStagerByFrame::DataStagerByFrame (C++ function) DataStagerByFrame::distribute_coordinates (C++ function) DataStagerByFrame::m_sample (C++ member) DataStagerByFrame::NA (C++ member) DataStagerByFrame::NF (C++ member) DataStagerByFrame::NFN (C++ member) DataStagerByFrame::NN (C++ member) DataStagerByFrame::NNPP (C++ member)

DataStagerByFrame::NP (C++ member) DataStagerByFrame::p_coordinates (C++ member) DataStagerByFrame::partitioncomm_ (C++ member) DataStagerByFrame::stage (C++ function) DataStagerByFrame::stage_fillpartitions (C++ function) DataStagerByFrame::stage_firstpartition (C++ function) DataStagerByFrame::timer_ (C++ member) DataStagerByFrame::write (C++ function) DCDCoordinateWriter (C++ class), [1] DCDCoordinateWriter::blocks_ (C++ member) DCDCoordinateWriter::data_offset_ (C++ member) DCDCoordinateWriter::DCDCoordinateWriter (C++ function) DCDCoordinateWriter::entries_ (C++ member) DCDCoordinateWriter::file_ (C++ member) DCDCoordinateWriter::init (C++ function) DCDCoordinateWriter::prepare (C++ function) DCDCoordinateWriter::write (C++ function) DCDFrameset (C++ class), [1] DCDFrameset::block1_byte_offset (C++ member) DCDFrameset::block2_byte_offset (C++ member) DCDFrameset::block_size_byte (C++ member) DCDFrameset::close (C++ function) DCDFrameset::dcdfile (C++ member) DCDFrameset::DCDFrameset (C++ function), [1] DCDFrameset::detect (C++ function) DCDFrameset::flag_ext_block1 (C++ member) DCDFrameset::flag_ext_block2 (C++ member) DCDFrameset::generate_index (C++ function) DCDFrameset::init (C++ function) DCDFrameset::init_byte_pos (C++ member) DCDFrameset::read_frame (C++ function) DCDFrameset::serialize (C++ function) DCDFrameset::x_byte_offset (C++ member) DCDFrameset::y_byte_offset (C++ member) DCDFrameset::z_byte_offset (C++ member) DCDFrameset::~DCDFrameset (C++ function) DCDHeader (C++ class), [1] DCDHeader::buf1 (C++ member) DCDHeader::dummy1 (C++ member) DCDHeader::fingerprint (C++ member) DCDHeader::flag_ext_block1 (C++ member) DCDHeader::flag_ext_block2 (C++ member) DCDHeader::headsize (C++ member) DCDHeader::number_of_frames (C++ member) DCDHeader::size_of_timestep (C++ member) DCDHeader::timesteps_between_frames (C++ member) DebugIowriteParameters (C++ class), [1] DebugIowriteParameters::buffer (C++ member) DebugIowriteParameters::serialize (C++ function) DebugIowriteParameters::write (C++ member) DebugIowriteParameters::write_xml (C++ function) DebugMonitorParameters (C++ class), [1] DebugMonitorParameters::serialize (C++ function) DebugMonitorParameters::update (C++ member) DebugMonitorParameters::write_xml (C++ function) DebugParameters (C++ class), [1] DebugParameters::barriers (C++ member) DebugParameters::iowrite (C++ member) DebugParameters::monitor (C++ member) DebugParameters::print (C++ member) DebugParameters::serialize (C++ function) DebugParameters::timer (C++ member) DebugParameters::write_xml (C++ function) DebugPrintParameters (C++ class), [1] DebugPrintParameters::orientations (C++ member) DebugPrintParameters::serialize (C++ function) DebugPrintParameters::write_xml (C++ function) DecompositionParameters (C++ class), [1] DecompositionParameters::DecompositionParameters (C++ function) DecompositionParameters::get_NAF (C++ function) DecompositionParameters::get_NAFcycles (C++ function) DecompositionParameters::get_NN (C++ function) DecompositionParameters::get_NNpP (C++ function) DecompositionParameters::get_NP (C++ function) DecompositionParameters::get_NQ (C++ function) DecompositionParameters::get_NQcycles (C++ function) DecompositionParameters::m_elbytesize (C++ member) DecompositionParameters::m_NAF (C++ member) DecompositionParameters::m_NAFcycles (C++ member) DecompositionParameters::m_nbytesize (C++ member) DecompositionParameters::m_NN (C++ member) DecompositionParameters::m_NNpP (C++ member) DecompositionParameters::m_NP (C++ member) DecompositionParameters::m_NQ (C++ member) DecompositionParameters::m_NQcycles (C++ member) DecompositionParameters::m_penalty (C++ member) DecompositionParameters::nbytesize (C++ function) DecompositionParameters::penalty (C++ function) DecompositionParameters::penalty_percent (C++ function) DecompositionParameters::PID (C++ function) DecompositionPlan (C++ class), [1] DecompositionPlan::colors (C++ function) DecompositionPlan::DecompositionPlan (C++ function) DecompositionPlan::nbytesize (C++ function) DecompositionPlan::p_dp_best (C++ member) DecompositionPlan::partitions (C++ function) DecompositionPlan::partitionsize (C++ function) DecompositionPlan::penalty (C++ function) DecompositionPlan::static_imbalance (C++ function) DecompositionPlan::~DecompositionPlan (C++ function) determinant (C++ function) determinant_sign (C++ function) DivAssignment (C++ class), [1] DivAssignment::contains (C++ function) DivAssignment::DivAssignment (C++ function) DivAssignment::index (C++ function) DivAssignment::max (C++ function) DivAssignment::offset (C++ function) DivAssignment::operator[] (C++ function) DivAssignment::size (C++ function) DrawSphereHelper (C++ class), [1] DrawSphereHelper::center (C++ member) DrawSphereHelper::draw (C++ function) DrawSphereHelper::drawMeshedTriangleOnSphere (C++ function) DrawSphereHelper::DrawSphereHelper (C++ function) DrawSphereHelper::drawTriangleOnSphere (C++ function) DrawSphereHelper::maxEdgeLength (C++ member) DrawSphereHelper::midpointOnSphere (C++ function) DrawSphereHelper::radius (C++ member) DrawSphereHelper::vectors (C++ member)

E

Err (C++ class)

F

FileFrameset (C++ class), [1] FileFrameset::filename (C++ member) FileFrameset::frameset_index_ (C++ member) FileFrameset::generate_index (C++ function) FileFrameset::load_index (C++ function) FileFrameset::save_index (C++ function) FileFrameset::serialize (C++ function) FileFrameset::trim_index (C++ function) FileFrameset::~FileFrameset (C++ function) Fit (C++ class), [1] Fit::Fit (C++ function) FixedMotionWalker (C++ class), [1] FixedMotionWalker::FixedMotionWalker (C++ function), [1] FixedMotionWalker::m_translate (C++ member) FixedMotionWalker::serialize (C++ function) FixedMotionWalker::transform (C++ function) FixedMotionWalker::translation (C++ function) fmt (C++ type) fmt::formatter<CartesianCoor3D> (C++ struct), [1], [2] fmt::formatter<CartesianCoor3D>::format (C++ function) fmt::formatter<CartesianCoor3D>::parse (C++ function) Frame (C++ class), [1] Frame::clear (C++ function) Frame::coord3D (C++ function) Frame::number_of_atoms (C++ member) Frame::origin (C++ member) Frame::serialize (C++ function) Frame::t (C++ member)

Frame::unitcell (C++ member) Frame::x (C++ member) Frame::y (C++ member) Frame::z (C++ member) Frames (C++ class), [1] Frames::add_frameset (C++ function) Frames::find_frameset (C++ function) Frames::Frames (C++ function) Frames::framesets (C++ member) Frames::load (C++ function) Frames::number_of_frames (C++ member) Frames::serialize (C++ function) Frames::size (C++ function) Frames::test_framenumber (C++ function) Frameset (C++ class), [1] Frameset::frame_number_offset (C++ member) Frameset::number_of_atoms (C++ member) Frameset::number_of_frames (C++ member) Frameset::read_frame (C++ function) Frameset::serialize (C++ function) FramesetIndex (C++ class), [1] FramesetIndex::generate_signature (C++ function) FramesetIndex::get_signature (C++ function) FramesetIndex::load (C++ function) FramesetIndex::save (C++ function) FramesetIndex::select (C++ function) FramesetIndex::serialize (C++ function) FramesetIndex::set_signature (C++ function) FramesetIndex::signature (C++ member)

H

HDF5DataEntry (C++ struct), [1] HDF5DataEntry::fq (C++ member) HDF5DataEntry::fq0 (C++ member) HDF5DataEntry::fq2 (C++ member) HDF5DataEntry::p_fqt (C++ member) HDF5DataEntry::qvector (C++ member) HDF5WriterClient (C++ class), [1] HDF5WriterClient::data_queue (C++ member) HDF5WriterClient::flush (C++ function) HDF5WriterClient::HDF5WriterClient (C++ function) HDF5WriterClient::m_endpoint (C++ member) HDF5WriterClient::m_lastflush (C++ member) HDF5WriterClient::write (C++ function), [1] HDF5WriterClient::~HDF5WriterClient (C++ function) HDF5WriterService (C++ class), [1] HDF5WriterService::data_fq (C++ member) HDF5WriterService::data_fq0 (C++ member) HDF5WriterService::data_fq2 (C++ member) HDF5WriterService::data_fqt (C++ member)

HDF5WriterService::data_qvectors (C++ member) HDF5WriterService::flush (C++ function) HDF5WriterService::get_endpoint (C++ function) HDF5WriterService::get_qvectors (C++ function) HDF5WriterService::hangup (C++ function) HDF5WriterService::HDF5WriterService (C++ function) HDF5WriterService::init (C++ function) HDF5WriterService::init_new (C++ function) HDF5WriterService::listener (C++ function) HDF5WriterService::m_acceptor (C++ member) HDF5WriterService::m_filename (C++ member) HDF5WriterService::m_io_service (C++ member) HDF5WriterService::m_lastflush (C++ member) HDF5WriterService::m_listener (C++ member) HDF5WriterService::m_listener_status (C++ member) HDF5WriterService::run (C++ function) HDF5WriterService::test_fqt_dim (C++ function) HDF5WriterTag (C++ enum) HDF5WriterTag::HANGUP (C++ enumerator) HDF5WriterTag::WRITE (C++ enumerator)

I

IAtomselection (C++ class), [1] IAtomselection::operator[] (C++ function) IAtomselection::serialize (C++ function) IAtomselection::size (C++ function) IAtomselection::~IAtomselection (C++ function) ICoordinateWriter (C++ class), [1] ICoordinateWriter::init (C++ function) ICoordinateWriter::prepare (C++ function) ICoordinateWriter::write (C++ function) ImagNum (C++ class), [1] ImagNum::im (C++ member) ImagNum::ImagNum (C++ function), [1] ImagNum::length (C++ function) ImagNum::operator* (C++ function) ImagNum::operator+ (C++ function) ImagNum::operator- (C++ function) ImagNum::operator<< (C++ function)

ImagNum::operator= (C++ function) ImagNum::re (C++ member) ImagNum::serialize (C++ function) ImagNum::~ImagNum (C++ function) IndexAtomselection (C++ class), [1] IndexAtomselection::ids_ (C++ member) IndexAtomselection::IndexAtomselection (C++ function), [1] IndexAtomselection::operator[] (C++ function) IndexAtomselection::serialize (C++ function) IndexAtomselection::size (C++ function) Info (C++ class) IScatterDevice (C++ class), [1] IScatterDevice::getTimer (C++ function) IScatterDevice::progress (C++ function) IScatterDevice::run (C++ function) IScatterDevice::runner (C++ function) IScatterDevice::status (C++ function) IScatterDevice::~IScatterDevice (C++ function)

L

LimitsComputationMemoryParameters (C++ class), [1] LimitsComputationMemoryParameters::alignpad_buffer (C++ member) LimitsComputationMemoryParameters::exchange_buffer (C++ member) LimitsComputationMemoryParameters::result_buffer (C++ member) LimitsComputationMemoryParameters::scale (C++ member) LimitsComputationMemoryParameters::serialize (C++ function) LimitsComputationMemoryParameters::signal_buffer (C++ member) LimitsComputationMemoryParameters::write_xml (C++ function) LimitsComputationParameters (C++ class), [1] LimitsComputationParameters::cores (C++ member) LimitsComputationParameters::memory (C++ member) LimitsComputationParameters::processes (C++ member) LimitsComputationParameters::serialize (C++ function) LimitsComputationParameters::threads (C++ member) LimitsComputationParameters::write_xml (C++ function) LimitsDecompositionParameters (C++ class), [1] LimitsDecompositionParameters::partitions (C++ member) LimitsDecompositionParameters::serialize (C++ function) LimitsDecompositionParameters::utilization (C++ member) LimitsDecompositionParameters::write_xml (C++ function) LimitsDecompositionPartitionsParameters (C++ class), [1] LimitsDecompositionPartitionsParameters::automatic (C++ member) LimitsDecompositionPartitionsParameters::serialize (C++ function) LimitsDecompositionPartitionsParameters::size (C++ member) LimitsDecompositionPartitionsParameters::write_xml (C++ function) LimitsParameters (C++ class), [1] LimitsParameters::computation (C++ member) LimitsParameters::decomposition (C++ member) LimitsParameters::serialize (C++ function) LimitsParameters::services (C++ member) LimitsParameters::signal (C++ member) LimitsParameters::stage (C++ member) LimitsParameters::write_xml (C++ function) LimitsServicesMonitorParameters (C++ class), [1] LimitsServicesMonitorParameters::delay (C++ member) LimitsServicesMonitorParameters::sampling (C++ member) LimitsServicesMonitorParameters::serialize (C++ function) LimitsServicesMonitorParameters::write_xml (C++ function) LimitsServicesParameters (C++ class), [1] LimitsServicesParameters::monitor (C++ member) LimitsServicesParameters::serialize (C++ function) LimitsServicesParameters::signal (C++ member) LimitsServicesParameters::write_xml (C++ function) LimitsServicesSignalMemoryParameters (C++ class), [1] LimitsServicesSignalMemoryParameters::client (C++ member) LimitsServicesSignalMemoryParameters::serialize (C++ function) LimitsServicesSignalMemoryParameters::server (C++ member)

LimitsServicesSignalMemoryParameters::write_xml (C++ function) LimitsServicesSignalParameters (C++ class), [1] LimitsServicesSignalParameters::memory (C++ member) LimitsServicesSignalParameters::serialize (C++ function) LimitsServicesSignalParameters::times (C++ member) LimitsServicesSignalParameters::write_xml (C++ function) LimitsServicesSignalTimesParameters (C++ class), [1] LimitsServicesSignalTimesParameters::clientflush (C++ member) LimitsServicesSignalTimesParameters::serialize (C++ function) LimitsServicesSignalTimesParameters::serverflush (C++ member) LimitsServicesSignalTimesParameters::write_xml (C++ function) LimitsSignalParameters (C++ class), [1] LimitsSignalParameters::chunksize (C++ member) LimitsSignalParameters::serialize (C++ function) LimitsSignalParameters::write_xml (C++ function) LimitsStageMemoryParameters (C++ class), [1] LimitsStageMemoryParameters::buffer (C++ member) LimitsStageMemoryParameters::data (C++ member) LimitsStageMemoryParameters::serialize (C++ function) LimitsStageMemoryParameters::write_xml (C++ function) LimitsStageParameters (C++ class), [1] LimitsStageParameters::memory (C++ member) LimitsStageParameters::serialize (C++ function) LimitsStageParameters::write_xml (C++ function) LinearMotionWalker (C++ class), [1] LinearMotionWalker::generate (C++ function) LinearMotionWalker::LinearMotionWalker (C++ function), [1] LinearMotionWalker::m_translate (C++ member) LinearMotionWalker::serialize (C++ function) LinearMotionWalker::transform (C++ function) LinearMotionWalker::translation (C++ function) LocalBrownianMotionWalker (C++ class), [1] LocalBrownianMotionWalker::generate (C++ function) LocalBrownianMotionWalker::init (C++ function) LocalBrownianMotionWalker::LocalBrownianMotionWalker (C++ function), [1] LocalBrownianMotionWalker::m_direction (C++ member) LocalBrownianMotionWalker::m_displace (C++ member) LocalBrownianMotionWalker::m_init (C++ member) LocalBrownianMotionWalker::m_radius (C++ member) LocalBrownianMotionWalker::m_sampling (C++ member) LocalBrownianMotionWalker::m_seed (C++ member) LocalBrownianMotionWalker::p_mynormaldistribution (C++ member) LocalBrownianMotionWalker::p_myspheredistribution (C++ member) LocalBrownianMotionWalker::serialize (C++ function) LocalBrownianMotionWalker::transform (C++ function) LocalBrownianMotionWalker::translation (C++ function) LocalBrownianMotionWalker::translations (C++ member) LocalBrownianMotionWalker::~LocalBrownianMotionWalker (C++ function)

M

ModAssignment (C++ class), [1] ModAssignment::contains (C++ function) ModAssignment::index (C++ function) ModAssignment::max (C++ function) ModAssignment::ModAssignment (C++ function) ModAssignment::offset (C++ function) ModAssignment::operator[] (C++ function) ModAssignment::size (C++ function) MonitorClient (C++ class), [1] MonitorClient::lastupdate_ (C++ member) MonitorClient::m_endpoint (C++ member) MonitorClient::MonitorClient (C++ function) MonitorClient::reset_server (C++ function) MonitorClient::samplingfactor_ (C++ member) MonitorClient::set_samplingfactor (C++ function) MonitorClient::set_samplingfactor_server (C++ function) MonitorClient::update (C++ function) MonitorClient::update_thresholds (C++ member) MonitorService (C++ class), [1] MonitorService::get_endpoint (C++ function) MonitorService::hangup (C++ function) MonitorService::listener (C++ function) MonitorService::m_acceptor (C++ member) MonitorService::m_current (C++ member) MonitorService::m_from (C++ member) MonitorService::m_io_service (C++ member) MonitorService::m_listener (C++ member) MonitorService::m_listener_status (C++ member) MonitorService::m_timer (C++ member) MonitorService::m_timerlabel (C++ member) MonitorService::m_to (C++ member) MonitorService::MonitorService (C++ function) MonitorService::print (C++ function) MonitorService::reset (C++ function) MonitorService::reset_state (C++ function) MonitorService::reset_timer (C++ function) MonitorService::run (C++ function) MonitorService::samplingfactor_ (C++ member) MonitorService::update (C++ function) MonitorService::update_thresholds (C++ member) MonitorTag (C++ enum) MonitorTag::MONITOR_HANGUP (C++ enumerator) MonitorTag::MONITOR_RESET (C++ enumerator) MonitorTag::MONITOR_SAMPLINGFACTOR (C++ enumerator) MonitorTag::MONITOR_UPDATE (C++ enumerator) MotionWalker (C++ class), [1] MotionWalker::serialize (C++ function) MotionWalker::transform (C++ function) MotionWalkerAlignment (C++ class), [1] MotionWalkerAlignment::p_mw (C++ member) MotionWalkerAlignment::p_reference (C++ member) MotionWalkerAlignment::reference_selection (C++ member) MotionWalkerAlignment::selection (C++ member) MotionWalkerAlignment::serialize (C++ function) MPCylinderScatterDevice (C++ class), [1] MPCylinderScatterDevice::alignpad (C++ function)

MPCylinderScatterDevice::at_ (C++ member) MPCylinderScatterDevice::compute (C++ function) MPCylinderScatterDevice::current_moment_ (C++ member) MPCylinderScatterDevice::dsp (C++ function) MPCylinderScatterDevice::exchange (C++ function) MPCylinderScatterDevice::fftw_planB_ (C++ member) MPCylinderScatterDevice::fftw_planF_ (C++ member) MPCylinderScatterDevice::init_moments (C++ function) MPCylinderScatterDevice::j_l (C++ member) MPCylinderScatterDevice::MPCylinderScatterDevice (C++ function) MPCylinderScatterDevice::multipole_index_ (C++ member) MPCylinderScatterDevice::NM (C++ member) MPCylinderScatterDevice::p_coordinates (C++ member) MPCylinderScatterDevice::print_post_runner_info (C++ function) MPCylinderScatterDevice::print_post_stage_info (C++ function) MPCylinderScatterDevice::print_pre_runner_info (C++ function) MPCylinderScatterDevice::print_pre_stage_info (C++ function) MPCylinderScatterDevice::progress (C++ function) MPCylinderScatterDevice::qvector_ (C++ member) MPCylinderScatterDevice::ram_check (C++ function) MPCylinderScatterDevice::scatter (C++ function) MPCylinderScatterDevice::scatterblock (C++ function) MPCylinderScatterDevice::stage_data (C++ function) MPCylinderScatterDevice::store (C++ function) MPCylinderScatterDevice::~MPCylinderScatterDevice (C++ function) mpi (C++ type), [1], [2] mpi::wrapper (C++ type), [1], [2], [3] mpi::wrapper::broadcast_class (C++ function), [1], [2] mpi::wrapper::broadcast_stream (C++ function), [1], [2] MPSphereScatterDevice (C++ class), [1] MPSphereScatterDevice::alignpad (C++ function) MPSphereScatterDevice::at_ (C++ member) MPSphereScatterDevice::compute (C++ function) MPSphereScatterDevice::current_moment_ (C++ member) MPSphereScatterDevice::dsp (C++ function) MPSphereScatterDevice::exchange (C++ function) MPSphereScatterDevice::fftw_planB_ (C++ member) MPSphereScatterDevice::fftw_planF_ (C++ member) MPSphereScatterDevice::init_moments (C++ function) MPSphereScatterDevice::j_l (C++ member) MPSphereScatterDevice::LMAX (C++ member) MPSphereScatterDevice::MPSphereScatterDevice (C++ function) MPSphereScatterDevice::multipole_index_ (C++ member) MPSphereScatterDevice::NM (C++ member) MPSphereScatterDevice::p_coordinates (C++ member) MPSphereScatterDevice::print_post_runner_info (C++ function) MPSphereScatterDevice::print_post_stage_info (C++ function) MPSphereScatterDevice::print_pre_runner_info (C++ function) MPSphereScatterDevice::print_pre_stage_info (C++ function) MPSphereScatterDevice::progress (C++ function) MPSphereScatterDevice::qvector_ (C++ member) MPSphereScatterDevice::ram_check (C++ function) MPSphereScatterDevice::scatter (C++ function) MPSphereScatterDevice::scatterblock (C++ function) MPSphereScatterDevice::stage_data (C++ function) MPSphereScatterDevice::store (C++ function) MPSphereScatterDevice::~MPSphereScatterDevice (C++ function)

O

operator* (C++ function), [1], [2], [3], [4], [5], [6], [7] operator/ (C++ function), [1], [2], [3], [4], [5] operator<< (C++ function), [1], [2], [3] OscillationMotionWalker (C++ class), [1] OscillationMotionWalker::m_frequency (C++ member)

OscillationMotionWalker::m_sampling (C++ member) OscillationMotionWalker::m_translate (C++ member) OscillationMotionWalker::OscillationMotionWalker (C++ function), [1] OscillationMotionWalker::serialize (C++ function) OscillationMotionWalker::transform (C++ function) OscillationMotionWalker::translation (C++ function)

P

PDBFrameset (C++ class), [1] PDBFrameset::default_uc (C++ member) PDBFrameset::detect (C++ function) PDBFrameset::generate_index (C++ function) PDBFrameset::init (C++ function) PDBFrameset::PDBFrameset (C++ function), [1] PDBFrameset::read_frame (C++ function) PDBFrameset::serialize (C++ function) PerformanceAnalyzer (C++ class), [1] PerformanceAnalyzer::analyze (C++ function)

PerformanceAnalyzer::m_measures (C++ member) PerformanceAnalyzer::PerformanceAnalyzer (C++ function) PerformanceAnalyzer::report (C++ function) PerformanceAnalyzer::report_relative (C++ function) PerformanceMeasure (C++ struct), [1] PerformanceMeasure::count (C++ member) PerformanceMeasure::max (C++ member) PerformanceMeasure::mean (C++ member) PerformanceMeasure::min (C++ member) PerformanceMeasure::sum (C++ member) PerformanceMeasure::variance (C++ member)

R

RandomMotionWalker (C++ class), [1] RandomMotionWalker::generate (C++ function) RandomMotionWalker::init (C++ function) RandomMotionWalker::m_direction (C++ member) RandomMotionWalker::m_displace (C++ member) RandomMotionWalker::m_init (C++ member) RandomMotionWalker::m_sampling (C++ member) RandomMotionWalker::m_seed (C++ member) RandomMotionWalker::p_myspheredistribution (C++ member) RandomMotionWalker::RandomMotionWalker (C++ function), [1] RandomMotionWalker::serialize (C++ function) RandomMotionWalker::transform (C++ function) RandomMotionWalker::translation (C++ function) RandomMotionWalker::translations (C++ member) RandomMotionWalker::~RandomMotionWalker (C++ function) RangeAtomselection (C++ class), [1] RangeAtomselection::from_ (C++ member) RangeAtomselection::operator[] (C++ function) RangeAtomselection::RangeAtomselection (C++ function), [1] RangeAtomselection::serialize (C++ function) RangeAtomselection::size (C++ function) RangeAtomselection::to_ (C++ member) ReciprocalBox (C++ class), [1] ReciprocalBox::_midpoint (C++ member) ReciprocalBox::_sld (C++ member)

ReciprocalBox::_xlength (C++ member) ReciprocalBox::_ylength (C++ member) ReciprocalBox::_zlength (C++ member) ReciprocalBox::get_midpoint (C++ function) ReciprocalBox::get_sld (C++ function) ReciprocalBox::get_xlength (C++ function) ReciprocalBox::get_ylength (C++ function) ReciprocalBox::get_zlength (C++ function) ReciprocalBox::ReciprocalBox (C++ function) ReciprocalBox::set_all (C++ function) rotate (C++ function), [1] RotationalBrownianMotionWalker (C++ class), [1] RotationalBrownianMotionWalker::generate (C++ function) RotationalBrownianMotionWalker::init (C++ function) RotationalBrownianMotionWalker::m_displace (C++ member) RotationalBrownianMotionWalker::m_init (C++ member) RotationalBrownianMotionWalker::m_sampling (C++ member) RotationalBrownianMotionWalker::m_seed (C++ member) RotationalBrownianMotionWalker::p_mynormaldistribution (C++ member) RotationalBrownianMotionWalker::p_myspheredistribution (C++ member) RotationalBrownianMotionWalker::RotationalBrownianMotionWalker (C++ function), [1] RotationalBrownianMotionWalker::serialize (C++ function) RotationalBrownianMotionWalker::transform (C++ function) RotationalBrownianMotionWalker::transformations (C++ member) RotationalBrownianMotionWalker::~RotationalBrownianMotionWalker (C++ function)

S

Sample (C++ class) SampleAlignmentParameters (C++ class), [1] SampleAlignmentParameters::order (C++ member) SampleAlignmentParameters::reference (C++ member) SampleAlignmentParameters::selection (C++ member) SampleAlignmentParameters::serialize (C++ function) SampleAlignmentParameters::type (C++ member) SampleAlignmentParameters::write_xml (C++ function) SampleAlignmentReferenceParameters (C++ class), [1] SampleAlignmentReferenceParameters::file (C++ member) SampleAlignmentReferenceParameters::filepath (C++ member) SampleAlignmentReferenceParameters::format (C++ member) SampleAlignmentReferenceParameters::frame (C++ member) SampleAlignmentReferenceParameters::selection (C++ member) SampleAlignmentReferenceParameters::serialize (C++ function) SampleAlignmentReferenceParameters::type (C++ member) SampleAlignmentReferenceParameters::write_xml (C++ function) SampleFileSelectionParameters (C++ class), [1] SampleFileSelectionParameters::expression_ (C++ member) SampleFileSelectionParameters::file_ (C++ member) SampleFileSelectionParameters::filepath_ (C++ member) SampleFileSelectionParameters::format_ (C++ member) SampleFileSelectionParameters::SampleFileSelectionParameters (C++ function), [1] SampleFileSelectionParameters::selector_ (C++ member) SampleFileSelectionParameters::serialize (C++ function) SampleFileSelectionParameters::write_xml (C++ function) SampleFramesetParameters (C++ class), [1] SampleFramesetParameters::clones (C++ member) SampleFramesetParameters::file (C++ member) SampleFramesetParameters::filepath (C++ member) SampleFramesetParameters::first (C++ member) SampleFramesetParameters::format (C++ member) SampleFramesetParameters::index (C++ member) SampleFramesetParameters::index_default (C++ member) SampleFramesetParameters::indexpath (C++ member) SampleFramesetParameters::last (C++ member) SampleFramesetParameters::last_set (C++ member) SampleFramesetParameters::serialize (C++ function) SampleFramesetParameters::stride (C++ member) SampleFramesetParameters::write_xml (C++ function) SampleFramesetsParameters (C++ class), [1] SampleFramesetsParameters::serialize (C++ function) SampleFramesetsParameters::write_xml (C++ function) SampleIndexSelectionParameters (C++ class), [1] SampleIndexSelectionParameters::ids_ (C++ member) SampleIndexSelectionParameters::SampleIndexSelectionParameters (C++ function), [1] SampleIndexSelectionParameters::serialize (C++ function) SampleIndexSelectionParameters::write_xml (C++ function) SampleLexicalSelectionParameters (C++ class), [1] SampleLexicalSelectionParameters::expression_ (C++ member) SampleLexicalSelectionParameters::SampleLexicalSelectionParameters (C++ function), [1] SampleLexicalSelectionParameters::serialize (C++ function) SampleLexicalSelectionParameters::write_xml (C++ function) SampleMotionParameters (C++ class), [1] SampleMotionParameters::direction (C++ member) SampleMotionParameters::displace (C++ member) SampleMotionParameters::frequency (C++ member) SampleMotionParameters::radius (C++ member) SampleMotionParameters::reference (C++ member) SampleMotionParameters::sampling (C++ member) SampleMotionParameters::seed (C++ member) SampleMotionParameters::selection (C++ member) SampleMotionParameters::serialize (C++ function) SampleMotionParameters::type (C++ member) SampleMotionParameters::write_xml (C++ function) SampleMotionReferenceParameters (C++ class), [1] SampleMotionReferenceParameters::file (C++ member) SampleMotionReferenceParameters::filepath (C++ member) SampleMotionReferenceParameters::format (C++ member) SampleMotionReferenceParameters::frame (C++ member) SampleMotionReferenceParameters::selection (C++ member) SampleMotionReferenceParameters::serialize (C++ function) SampleMotionReferenceParameters::type (C++ member) SampleMotionReferenceParameters::write_xml (C++ function) SampleParameters (C++ class), [1] SampleParameters::alignments (C++ member) SampleParameters::framesets (C++ member) SampleParameters::motions (C++ member) SampleParameters::selections (C++ member) SampleParameters::serialize (C++ function) SampleParameters::structure (C++ member) SampleParameters::write_xml (C++ function) SampleParameters::~SampleParameters (C++ function) SampleRangeSelectionParameters (C++ class), [1] SampleRangeSelectionParameters::from_ (C++ member) SampleRangeSelectionParameters::SampleRangeSelectionParameters (C++ function), [1] SampleRangeSelectionParameters::serialize (C++ function) SampleRangeSelectionParameters::to_ (C++ member) SampleRangeSelectionParameters::write_xml (C++ function) SampleSelectionParameters (C++ class), [1] SampleSelectionParameters::SampleSelectionParameters (C++ function), [1] SampleSelectionParameters::serialize (C++ function) SampleSelectionParameters::type (C++ function) SampleSelectionParameters::type_ (C++ member) SampleSelectionParameters::write_xml (C++ function) SampleStructureParameters (C++ class), [1] SampleStructureParameters::file (C++ member) SampleStructureParameters::filepath (C++ member) SampleStructureParameters::format (C++ member) SampleStructureParameters::serialize (C++ function) SampleStructureParameters::write_xml (C++ function) sass (C++ type), [1] sass::err (C++ function) sass::info (C++ function) sass::platform (C++ type), [1], [2] sass::platform::Device (C++ enum), [1], [2] sass::platform::device (C++ function), [1], [2] sass::platform::Device::CPU (C++ enumerator), [1], [2] sass::platform::Device::CUDA (C++ enumerator), [1], [2] sass::platform::Device::SYCL (C++ enumerator), [1], [2] sass::platform::is_cuda (C++ function), [1], [2] sass::platform::is_sycl (C++ function), [1], [2] sass::platform::to_string (C++ function), [1], [2] sass::warn (C++ function) sass_use_float (C++ function) sassena (C++ type), [1] sassena::help_request (C++ class), [1], [2] sassena::help_request::help_request (C++ function) sassena::terminate_request (C++ class), [1], [2] sassena::terminate_request::terminate_request (C++ function) sassf (C++ type) ScatterDeviceFactory (C++ class), [1], [2] ScatterDeviceFactory::create (C++ function) ScatterFactors (C++ class), [1] ScatterFactors::_ReciBox (C++ member) ScatterFactors::compute_background (C++ function) ScatterFactors::factors (C++ member) ScatterFactors::get (C++ function) ScatterFactors::get_all (C++ function) ScatterFactors::get_recibox (C++ function) ScatterFactors::get_selection (C++ function) ScatterFactors::m_background (C++ member) ScatterFactors::m_kappas (C++ member) ScatterFactors::p_sample (C++ member) ScatterFactors::p_selection (C++ member) ScatterFactors::ScatterFactors (C++ function) ScatterFactors::set_background (C++ function) ScatterFactors::set_sample (C++ function) ScatterFactors::set_selection (C++ function) ScatterFactors::update (C++ function) ScatterFactors::update_kappas (C++ function) ScatterFactors::update_reciprocal_box (C++ function) ScatteringAverageOrientationExactParameters (C++ class), [1] ScatteringAverageOrientationExactParameters::serialize (C++ function) ScatteringAverageOrientationExactParameters::type (C++ member) ScatteringAverageOrientationExactParameters::write_xml (C++ function) ScatteringAverageOrientationMultipoleMomentsParameters (C++ class), [1] ScatteringAverageOrientationMultipoleMomentsParameters::create (C++ function) ScatteringAverageOrientationMultipoleMomentsParameters::file (C++ member) ScatteringAverageOrientationMultipoleMomentsParameters::filepath (C++ member) ScatteringAverageOrientationMultipoleMomentsParameters::resolution (C++ member) ScatteringAverageOrientationMultipoleMomentsParameters::serialize (C++ function) ScatteringAverageOrientationMultipoleMomentsParameters::type (C++ member) ScatteringAverageOrientationMultipoleMomentsParameters::write_xml (C++ function) ScatteringAverageOrientationMultipoleParameters (C++ class), [1] ScatteringAverageOrientationMultipoleParameters::moments (C++ member) ScatteringAverageOrientationMultipoleParameters::serialize (C++ function) ScatteringAverageOrientationMultipoleParameters::type (C++ member) ScatteringAverageOrientationMultipoleParameters::write_xml (C++ function) ScatteringAverageOrientationParameters (C++ class), [1] ScatteringAverageOrientationParameters::axis (C++ member) ScatteringAverageOrientationParameters::exact (C++ member) ScatteringAverageOrientationParameters::multipole (C++ member) ScatteringAverageOrientationParameters::serialize (C++ function) ScatteringAverageOrientationParameters::type (C++ member) ScatteringAverageOrientationParameters::vectors (C++ member) ScatteringAverageOrientationParameters::write_xml (C++ function) ScatteringAverageOrientationVectorsParameters (C++ class), [1]

ScatteringAverageOrientationVectorsParameters::algorithm (C++ member) ScatteringAverageOrientationVectorsParameters::create (C++ function) ScatteringAverageOrientationVectorsParameters::file (C++ member) ScatteringAverageOrientationVectorsParameters::filepath (C++ member) ScatteringAverageOrientationVectorsParameters::resolution (C++ member) ScatteringAverageOrientationVectorsParameters::seed (C++ member) ScatteringAverageOrientationVectorsParameters::serialize (C++ function) ScatteringAverageOrientationVectorsParameters::type (C++ member) ScatteringAverageOrientationVectorsParameters::write_xml (C++ function) ScatteringAverageParameters (C++ class), [1] ScatteringAverageParameters::orientation (C++ member) ScatteringAverageParameters::serialize (C++ function) ScatteringAverageParameters::write_xml (C++ function) ScatteringBackgroundCutBoxParameters (C++ class), [1] ScatteringBackgroundCutBoxParameters::midpoint (C++ member) ScatteringBackgroundCutBoxParameters::ScatteringBackgroundCutBoxParameters (C++ function) ScatteringBackgroundCutBoxParameters::serialize (C++ function) ScatteringBackgroundCutBoxParameters::sld (C++ member) ScatteringBackgroundCutBoxParameters::write_xml (C++ function) ScatteringBackgroundCutBoxParameters::xlength (C++ member) ScatteringBackgroundCutBoxParameters::ylength (C++ member) ScatteringBackgroundCutBoxParameters::zlength (C++ member) ScatteringBackgroundCutParameters (C++ class), [1] ScatteringBackgroundCutParameters::box (C++ member) ScatteringBackgroundCutParameters::serialize (C++ function) ScatteringBackgroundCutParameters::write_xml (C++ function) ScatteringBackgroundFactor (C++ class), [1] ScatteringBackgroundFactor::selection (C++ member) ScatteringBackgroundFactor::serialize (C++ function) ScatteringBackgroundFactor::value (C++ member) ScatteringBackgroundFactor::write_xml (C++ function) ScatteringBackgroundKappaParameters (C++ class), [1] ScatteringBackgroundKappaParameters::selection (C++ member) ScatteringBackgroundKappaParameters::serialize (C++ function) ScatteringBackgroundKappaParameters::value (C++ member) ScatteringBackgroundKappaParameters::write_xml (C++ function) ScatteringBackgroundParameters (C++ class), [1] ScatteringBackgroundParameters::cut (C++ member) ScatteringBackgroundParameters::factor (C++ member) ScatteringBackgroundParameters::kappas (C++ member) ScatteringBackgroundParameters::serialize (C++ function) ScatteringBackgroundParameters::type (C++ member) ScatteringBackgroundParameters::write_xml (C++ function) ScatteringDspParameters (C++ class), [1] ScatteringDspParameters::Method (C++ enum) ScatteringDspParameters::method (C++ member) ScatteringDspParameters::Method::Direct (C++ enumerator) ScatteringDspParameters::Method::FFTW (C++ enumerator) ScatteringDspParameters::serialize (C++ function) ScatteringDspParameters::Type (C++ enum) ScatteringDspParameters::type (C++ member) ScatteringDspParameters::Type::Autocorrelate (C++ enumerator) ScatteringDspParameters::Type::Plain (C++ enumerator) ScatteringDspParameters::Type::Square (C++ enumerator) ScatteringDspParameters::write_xml (C++ function) ScatteringParameters (C++ class), [1] ScatteringParameters::average (C++ member) ScatteringParameters::background (C++ member) ScatteringParameters::dsp (C++ member) ScatteringParameters::qvectors (C++ member) ScatteringParameters::serialize (C++ function) ScatteringParameters::signal (C++ member) ScatteringParameters::type (C++ member) ScatteringParameters::write_xml (C++ function) ScatteringSignalParameters (C++ class), [1] ScatteringSignalParameters::file (C++ member) ScatteringSignalParameters::filepath (C++ member) ScatteringSignalParameters::fq (C++ member) ScatteringSignalParameters::fq0 (C++ member) ScatteringSignalParameters::fq2 (C++ member) ScatteringSignalParameters::fqt (C++ member) ScatteringSignalParameters::serialize (C++ function) ScatteringSignalParameters::write_xml (C++ function) ScatteringVectorsParameters (C++ class), [1] ScatteringVectorsParameters::create_from_scans (C++ function) ScatteringVectorsParameters::scans (C++ member) ScatteringVectorsParameters::serialize (C++ function) ScatteringVectorsParameters::write_xml (C++ function) ScatteringVectorsScanParameters (C++ class), [1] ScatteringVectorsScanParameters::basevector (C++ member) ScatteringVectorsScanParameters::exponent (C++ member) ScatteringVectorsScanParameters::from (C++ member) ScatteringVectorsScanParameters::points (C++ member) ScatteringVectorsScanParameters::ScatteringVectorsScanParameters (C++ function) ScatteringVectorsScanParameters::serialize (C++ function) ScatteringVectorsScanParameters::to (C++ member) ScatteringVectorsScanParameters::write_xml (C++ function) SelfVectorsCUDAScatterDevice (C++ class), [1] SelfVectorsCUDAScatterDevice::assignment_ (C++ member) SelfVectorsCUDAScatterDevice::blockDim_ (C++ member) SelfVectorsCUDAScatterDevice::compute (C++ function) SelfVectorsCUDAScatterDevice::coord_size_ (C++ member) SelfVectorsCUDAScatterDevice::current_atomindex_ (C++ member) SelfVectorsCUDAScatterDevice::da2final_ (C++ member) SelfVectorsCUDAScatterDevice::dafinal_ (C++ member) SelfVectorsCUDAScatterDevice::datfinal_ (C++ member) SelfVectorsCUDAScatterDevice::dcoords (C++ member) SelfVectorsCUDAScatterDevice::dscatter_factors (C++ member) SelfVectorsCUDAScatterDevice::dsp (C++ function) SelfVectorsCUDAScatterDevice::dsubvector_index (C++ member) SelfVectorsCUDAScatterDevice::global_memory_ (C++ member) SelfVectorsCUDAScatterDevice::max_parallel_atoms_ (C++ member) SelfVectorsCUDAScatterDevice::max_threads_per_block_ (C++ member) SelfVectorsCUDAScatterDevice::max_threads_per_sm_ (C++ member) SelfVectorsCUDAScatterDevice::NTHREADS (C++ member) SelfVectorsCUDAScatterDevice::num_sm_ (C++ member) SelfVectorsCUDAScatterDevice::operator= (C++ function) SelfVectorsCUDAScatterDevice::print_pre_runner_info (C++ function) SelfVectorsCUDAScatterDevice::progress (C++ function) SelfVectorsCUDAScatterDevice::ram_check (C++ function) SelfVectorsCUDAScatterDevice::scatter (C++ function) SelfVectorsCUDAScatterDevice::scatterblock (C++ function) SelfVectorsCUDAScatterDevice::SelfVectorsCUDAScatterDevice (C++ function), [1] SelfVectorsCUDAScatterDevice::shared_mem_per_block_ (C++ member) SelfVectorsCUDAScatterDevice::stage_data (C++ function) SelfVectorsCUDAScatterDevice::store (C++ function) SelfVectorsCUDAScatterDevice::~SelfVectorsCUDAScatterDevice (C++ function) SelfVectorsScatterDevice (C++ class), [1], [2] SelfVectorsScatterDevice::assignment_ (C++ member) SelfVectorsScatterDevice::at_ (C++ member) SelfVectorsScatterDevice::compute (C++ function) SelfVectorsScatterDevice::coord_size_ (C++ member) SelfVectorsScatterDevice::current_atomindex_ (C++ member) SelfVectorsScatterDevice::dsp (C++ function) SelfVectorsScatterDevice::fftw_planB_ (C++ member) SelfVectorsScatterDevice::fftw_planF_ (C++ member) SelfVectorsScatterDevice::operator= (C++ function) SelfVectorsScatterDevice::p_coordinates (C++ member) SelfVectorsScatterDevice::progress (C++ function) SelfVectorsScatterDevice::ram_check (C++ function) SelfVectorsScatterDevice::scatter (C++ function) SelfVectorsScatterDevice::scatter_single (C++ function) SelfVectorsScatterDevice::scatterblock (C++ function) SelfVectorsScatterDevice::SelfVectorsScatterDevice (C++ function), [1] SelfVectorsScatterDevice::stage_data (C++ function) SelfVectorsScatterDevice::store (C++ function) SelfVectorsScatterDevice::~SelfVectorsScatterDevice (C++ function) sign (C++ function) sinc (C++ function), [1] smath (C++ type), [1], [2] smath::add_elements (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] smath::auto_correlate_direct (C++ function), [1], [2], [3], [4], [5] smath::auto_correlate_fftw (C++ function), [1], [2], [3], [4], [5], [6], [7], [8], [9] smath::multiply_elements (C++ function), [1], [2], [3], [4], [5] smath::reduce (C++ function), [1], [2], [3], [4], [5] smath::sine (C++ function), [1] smath::square_elements (C++ function), [1], [2], [3], [4], [5] SphericalCoor3D (C++ class), [1] SphericalCoor3D::operator- (C++ function) SphericalCoor3D::operator<< (C++ function) SphericalCoor3D::operator= (C++ function) SphericalCoor3D::phi (C++ member) SphericalCoor3D::r (C++ member) SphericalCoor3D::SphericalCoor3D (C++ function), [1], [2], [3] SphericalCoor3D::theta (C++ member) SphericalCoor3D::~SphericalCoor3D (C++ function) SphericalCoordinateSet (C++ class), [1] SphericalCoordinateSet::serialize (C++ function) SphericalCoordinateSet::SphericalCoordinateSet (C++ function), [1] StagerParameters (C++ class), [1] StagerParameters::dump (C++ member) StagerParameters::file (C++ member) StagerParameters::filepath (C++ member) StagerParameters::format (C++ member) StagerParameters::mode (C++ member) StagerParameters::serialize (C++ function) StagerParameters::target (C++ member) StagerParameters::write_xml (C++ function) std (C++ type), [1]

T

Timer (C++ class), [1] Timer::clear (C++ function) Timer::count (C++ function) Timer::has_key (C++ function) Timer::keys (C++ function) Timer::max (C++ function) Timer::mean (C++ function) Timer::min (C++ function) Timer::serialize (C++ function) Timer::start (C++ function) Timer::starttimes (C++ member) Timer::states (C++ member) Timer::stop (C++ function) Timer::sum (C++ function) Timer::t_diff (C++ function), [1] Timer::times (C++ member) Timer::times_type (C++ type)

Timer::variance (C++ function) Timer_timeval (C++ class), [1] Timer_timeval::operator= (C++ function) Timer_timeval::serialize (C++ function) Timer_timeval::Timer_timeval (C++ function), [1] Timer_timeval::tv_sec (C++ member) Timer_timeval::tv_usec (C++ member) TRRFrameset (C++ class), [1] TRRFrameset::close (C++ function) TRRFrameset::detect (C++ function) TRRFrameset::generate_index (C++ function) TRRFrameset::init (C++ function) TRRFrameset::p_xdrfile (C++ member) TRRFrameset::read_frame (C++ function) TRRFrameset::serialize (C++ function) TRRFrameset::TRRFrameset (C++ function), [1] TRRFrameset::~TRRFrameset (C++ function)

W

Warn (C++ class)

X

XMLElement (C++ class), [1] XMLElement::children (C++ member) XMLElement::content (C++ function) XMLElement::get_node_ptr (C++ function) XMLElement::name (C++ function) XMLElement::node_ptr (C++ member) XMLElement::print (C++ function) XMLElement::set (C++ function) XMLElement::type (C++ function) XMLElement::XMLElement (C++ function) XMLInterface (C++ class), [1] XMLInterface::dump (C++ function) XMLInterface::exists (C++ function) XMLInterface::get (C++ function), [1] XMLInterface::get_value (C++ function)

XMLInterface::p_doc (C++ member) XMLInterface::p_xpathCtx (C++ member) XMLInterface::set_current (C++ function) XMLInterface::XMLInterface (C++ function) XMLInterface::~XMLInterface (C++ function) XTCFrameset (C++ class), [1] XTCFrameset::close (C++ function) XTCFrameset::detect (C++ function) XTCFrameset::generate_index (C++ function) XTCFrameset::init (C++ function) XTCFrameset::p_xdrfile (C++ member) XTCFrameset::read_frame (C++ function) XTCFrameset::serialize (C++ function) XTCFrameset::XTCFrameset (C++ function), [1] XTCFrameset::~XTCFrameset (C++ function)